GgaEX1034350 @ galGal4
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
latent transforming growth factor beta binding protein 1 [Source:HGNC Symbol;Acc:HGNC:6714]
Coordinates
chr3:30503936-30508757:-
Coord C1 exon
chr3:30508575-30508757
Coord A exon
chr3:30507179-30507265
Coord C2 exon
chr3:30503936-30504064
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCCCTCTCTTGTAGCTG
3' ss Score
11.31
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
AATTGCCAATAGAGCCTGATCAACATGAAGATGGAAAGAAGGAGTGCTACTACAATCTGAATGATGCTAACTTCTGTGACAATGTGCTTGCGTCCAATGTAACCAAACAAGAATGCTGCTGTACTTTGGGTGCTGGCTGGGGTGATAACTGTGAAATCTTCCCATGCCCTGTCTTTGGAACTG
Seq A exon
CTGAATTCACTGATTTGTGTCCTGAAGGGAAAGGCTTCATTCCCTCTGGAGAATCATCTTACGGGCTTCTTGCCGAGAATTACAAAG
Seq C2 exon
ATGCTGATGAATGCCAGCTCTTTGGACAAGAAATCTGTAAAAATGGCTTCTGTTTGAATACACAGCCAGGTTATGAGTGCTACTGCAAACAAGGCACATACTATGACCCTGTTAAGCTCCAGTGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-'51-63,'51-61,52-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(86.4=61.3)
A:
PF0068312=TB=PD(11.4=16.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGGGGTGATAACTGTGA
R:
GCACTGGAGCTTAACAGGGTC
Band lengths:
175-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]