BtaEX6043423 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15803018-15812390:+
Coord C1 exon
chr11:15803018-15803117
Coord A exon
chr11:15803912-15804010
Coord C2 exon
chr11:15812265-15812390
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCCTCCTCATATAGTAG
3' ss Score
6.87
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAAATACCTTCATTGGATCAAGAGAAAACCAGACTTGAGCCTGGTCAACCCCAGCTCTCTCCAGGCATTTCAACCATTCATCTGCATCCACAGTTTCCAG
Seq A exon
TAGTGATTGAAAAAACATCACCTCCTATGCCTGTGGAAGTAGCTCCTGAAGCTTCAACATCAAGCGCCAGCCAAGTCATTGCACCTACTCAAGTAACAG
Seq C2 exon
AAATCAATGAATGTACTGTGAACCCTGACATCTGTGGAGCAGGACACTGCATTAACCTGCCAGTGAGGTATACCTGTATATGCTACGATGGCTACAAGTTCAATGAGCAACAGAGGAAATGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-'44-34,'44-32,46-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=0.735 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACTTGAGCCTGGTCAACC
R:
TGAACTTGTAGCCATCGTAGCA
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]