GgaEX1034361 @ galGal3
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
NA
Coordinates
chr3:32430565-32436185:-
Coord C1 exon
chr3:32436086-32436185
Coord A exon
chr3:32435399-32435497
Coord C2 exon
chr3:32430565-32430690
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCCATTCCATGTCACGCAGTAG
3' ss Score
2.39
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
GAATTAGTTTCACTTGATCAAGAAAAGCAAATACTAGAGCCTGGACAGCCTCAGCTTTCTCCTGGAATTTCAACAATTAACCTGCATCCACAGTTTCCAG
Seq A exon
TAGTGATTGAGAAAACATCTCCGCCTCTGCCTGTTGAAGTTGCTCCTGAAGTCTCTACTTCGAGTGCAAGTCAAGTAATTGCACCTACTCAAGTTACAG
Seq C2 exon
AAATCAACGAGTGTACAGTTAATCCTGATATCTGTGGAGCAGGACACTGCGTTAATTTGCCTGTGGGATACACCTGCATCTGCTACGAGGGATACAGACTTAACGATCAGCAGACAAAATGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-'13-24,'13-22,14-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.618 A=0.441 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACTAGAGCCTGGACAGCCT
R:
TGTATCCCTCGTAGCAGATGCA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]