DreEX0044078 @ danRer10
Exon Skipping
Gene
ENSDARG00000056922 | ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-091202-8]
Coordinates
chr17:23038680-23045647:+
Coord C1 exon
chr17:23038680-23038895
Coord A exon
chr17:23043608-23043694
Coord C2 exon
chr17:23045522-23045647
Length
87 bp
Sequences
Splice sites
3' ss Seq
TATTACCTGTCCCTCTCCAGAGG
3' ss Score
9.59
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTGCGTTTAAAGACATTTGTCCTGGAGGTATGGGTTACCACGTCACCCCACCATACATTTACAAGCCCAAACCTCCTAATGGACACACTCAGACAGACAGTCAGGGGTACAACAATCCCACCATCAGACACCAAGTCCCTATGGATCCTCCAGTGCCCTTCCCCACCCTCCAGCAGCCCGTGGAGGCTCTGAGCATCACAGAGAGACAGCTGCCTG
Seq A exon
AGGTGGTGGAGAAAGTGTCACCACCGGCTCCAGTGGCAATTCCACCTTCCAATGAAGGTCAGGACATTACCCCAACACAGCTGGCTG
Seq C2 exon
AGATTGACGAGTGTGTAGTGAGACCTGATATCTGTGGTGCAGGAATCTGTTATAACACTGCTGAGAGCTACACATGCTTCTGTGATGACGGCTATAGAACGGACAGTGAGGGCACCACATGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056922_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.661 A=0.867 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.9=6.8)
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
ENSDART00000079460fB3667
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCCTCCAGTGCCCTTC
R:
AGCCGTCATCACAGAAGCATG
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]