RnoEX6027673 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21307962-21315141:-
Coord C1 exon
chr6:21315042-21315141
Coord A exon
chr6:21314475-21314573
Coord C2 exon
chr6:21307962-21308087
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCCTTCCTCATGCAGTAG
3' ss Score
8.79
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GAAATACCCTCACTGGATCAAGAGAAAACAAGACTTGAACCTGGGCAACCCCAGCTCTCCCCAGGGGTTTCAACTATTCATCTGCACCCACAGTTCCCAG
Seq A exon
TAGTGGTTGAAAAGACATCCCCTCCTGTGCCTGTGGAGGTGGCTCCTGAAGGTTCTACATCAAGTGCCAGCCAAGTGATTGCTCCTACGCAAGTAACAG
Seq C2 exon
AAATCAACGAATGTACTGTGAACCCGGATATTTGCGGAGCAGGACACTGCATCAACCTGCCGGTGAGGTATACCTGCATATGCTACGAGGGCTACAAGTTCAGTGAGCAGCAGAGGAAGTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090-'26-26,'26-23,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=0.706 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCCAGGGGTTTCAACT
R:
AATGCACTTCCTCTGCTGCTC
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]