BtaEX6045980 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012827 | TTLL11
Description
TTLL11 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A7E2Z5]
Coordinates
chr11:92851289-92867478:-
Coord C1 exon
chr11:92866903-92867478
Coord A exon
chr11:92852151-92852246
Coord C2 exon
chr11:92851289-92851404
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTGAATTATGTTTATCCAGATT
3' ss Score
4.91
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ACGGAATCTACCTCATCAAAGACCCCAGTGACATCCGCCTGTCAGGGACGCTCCAGAGCAGGCCGGCGGTGGTCCAGGAGTACATCTGCAAGCCCCTCCTCATCGACAAACTCAAGTTCGACATCCGTCTGTACGTCCTGCTAAAGTCTCTAGAGCCCTTAGAGATCTACATAGCCAAAGACGGACTCTCTCGGTTTTGTACGGAGCCGTACCAGGAGCCCAACCCCAAAAACCTGCACCACATCTTCATGCATTTGACCAACTACTCCCTGAACGTCCACAGTGGGAACTTCGTCCATTCGGACAGTACTAGCACGGGCAGCAAAAGGACTTTTTCTAGCATTCTCTATAGGTTGTCCTCCAAGGGTGTTGACATCAAAAAGATCTGGTCCGATATCATCTCCTTGGTGATCAAGACCGTCATTGCCCTGACTCCAGAACTCAAAGTGTTCTACCAGTCAGATATACCCGCGGGGAGGCCGGGCCCCACCTGCTTCCAG
Seq A exon
ATTTTAGGCTTTGACATTCTTCTCATGAAAAATCTGAAGCCTATACTACTTGAAGTAAATGCAAATCCCAGCATGAGAATCGAACACGAGCAAGAA
Seq C2 exon
CTCTCTCCAGGGGTATTTGAGAATGTCCCCAGTCTTGTCGATGAAGAAGTGAAAGTGGCCGTGATCAGAGACACACTGCGTCTCATGGACCCACTTAAAAAGAAAAGAGAGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012827-'2-6,'2-5,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF0313310=TTL=PU(75.9=99.5)
A:
PF0313310=TTL=FE(12.4=100)
C2:
PF0313310=TTL=PD(10.4=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGACCGTCATTGCCCTG
R:
CAGTGTGTCTCTGATCACGGC
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]