HsaEX0068064 @ hg38
Exon Skipping
Gene
ENSG00000175764 | TTLL11
Description
tubulin tyrosine ligase like 11 [Source:HGNC Symbol;Acc:HGNC:18113]
Coordinates
chr9:121870497-121989617:-
Coord C1 exon
chr9:121989195-121989617
Coord A exon
chr9:121974884-121974979
Coord C2 exon
chr9:121870497-121870748
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTGTGTTTATCCTGCCCAGATT
3' ss Score
6.01
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAGTACATCTGCAAACCTCTCCTTATCGACAAGCTCAAGTTTGATATTCGTCTGTATGTCTTACTCAAGTCCTTAGACCCCTTAGAGATTTATATAGCCAAAGACGGACTCTCTAGGTTTTGTACCGAGCCATATCAGGAGCCCACCCCCAAAAACCTGCACCGCATCTTTATGCACTTAACCAACTATTCACTGAACATCCACAGCGGCAACTTCATCCACTCGGACAGTGCTAGCACTGGCAGCAAAAGGACTTTTTCCAGCATCCTTTGTAGACTGTCTTCCAAAGGCGTTGACATCAAGAAGGTCTGGTCTGACATCATCTCCGTGGTGATTAAGACGGTCATCGCGCTGACTCCAGAGCTCAAAGTCTTCTACCAGTCAGACATCCCCACGGGGAGGCCGGGCCCCACGTGCTTCCAG
Seq A exon
ATTTTAGGCTTTGACATTCTTCTAATGAAAAATCTGAAGCCTATACTACTTGAAGTAAATGCAAATCCCAGTATGAGAATCGAACATGAGCACGAA
Seq C2 exon
GTCTCAGCAGCTTGAAAAACCATTCGCTGGAAAGGAAGATGCTTTGGACGGCGAGCTGACCAGTGCTCCAGACTGCAACGCCAACCCCGAAGCCCACCTGCCTTCCATTTGCCTCAAGCAGGTGTTCCCCAAGTACGCAAAACAGTTCAACTACCTGCGCCTGGTGGACAGGATGGCAAATTTGTTTATCCGGTTCCTGGGCATCAAGGGGACAATGAAGTTGGGGCCAACAGGCTTTCGTACCTTCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175764_MULTIEX1-4/6=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.016 C2=0.153
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(62.2=100)
A:
PF0313310=TTL=FE(10.1=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGTCAGACATCCCCACG
R:
CTTGGGGAACACCTGCTTGAG
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development