DreEX6011879 @ danRer10
Exon Skipping
Gene
ENSDARG00000060374 | ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:ZFIN;Acc:ZDB-GENE-061013-747]
Coordinates
chr5:33036201-33040455:+
Coord C1 exon
chr5:33036201-33036776
Coord A exon
chr5:33038504-33038599
Coord C2 exon
chr5:33040343-33040455
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACGATGTGTCCCAATTTTAGATC
3' ss Score
9.75
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATGGCATCTACCTCATCCGCGACCCTGCTGACCTTCGGGTGATCTCAGGTTCTCAGATCAAGCAATCGGTCGTTCAAGAATACATCCAGAAGCCCCTGCTCATCGATAAACTCAAGTTTGACATCCGCCTGTACGTTCTGGTCCGCTCACTGGATCCTCTAGAAATCTATATCGCTAAAGAAGGCTTGTCCAGGTTCTGCACCGAACCCTACCAGGAGCCCAGCCAGAAGAACCTCAGTCATGTTTTTATGCACCTTACCAACTACTCGCTGAATGTGCACAGCGGTAACTTTGTCCACTCTGACAGCTGCAGCACGGGCAGTAAACGCACCTTCTCTAGCGTCCTCTACCGCCTGGCGTCTAAAGGAGTGGACATCAAGAAGGTCTGGTCAGACATCATTGCTCTGGTTATCAAGACTGTAATTGCACTTGTGCCTGAACTGAAGGTCTATTACCAAGCTGACATACCACCTGGAAAACCAGGACCCACATGTTTTCAG
Seq A exon
ATCCTGGGCTTTGATATCCTGCTGATGAAGAACTTGAAGCCTGTTTTATTAGAAGTCAATGCCAATCCCAGCATGAGGATTGAACACGAGCAGGAG
Seq C2 exon
GTCTCACCTGGTGTGTATGAATACATCCCCAGTCCAGTAGATGAGGAGGTGAAAGTAGGAGTGATCAGAGACACACTGCGCCTCATGGATCCTGCTCAGAGGAAACACATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060374-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(61.4=100)
A:
PF0313310=TTL=FE(10.0=100)
C2:
PF0313310=TTL=PD(8.4=68.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTTGTGCCTGAACTGAA
R:
TCTGAGCAGGATCCATGAGGC
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]