GgaEX0027614 @ galGal4
Exon Skipping
Gene
ENSGALG00000001389 | TTLL11
Description
tubulin tyrosine ligase-like family member 11 [Source:HGNC Symbol;Acc:HGNC:18113]
Coordinates
chr17:8632423-8654491:-
Coord C1 exon
chr17:8654395-8654491
Coord A exon
chr17:8646702-8646797
Coord C2 exon
chr17:8632423-8632680
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACACTGTTTGTTATGCACAGATT
3' ss Score
6.84
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TTTCCTTTTGGCAGACGCTTGCCGTGTGATATCTATTGGCACGGAGTATCGTTTCATGATAGCTACATATTCTCAGGTCAAGTCAACAAGTTTCCAG
Seq A exon
ATTTTAGGGTTTGACATTCTCCTGATGAAAAACTTGAAGCCCATGTTGCTGGAAGTAAATGCAAACCCCAGCATGAGAATAGAGCACGAGCAAGAG
Seq C2 exon
ATCTCAGACTTCAGAGCATGTGTCAGAAACAAAAGAGGATCTGCTGGATGCAGGGCCAGCGGGTGGACTGGAATATGATACCAGCAAGACCCCAGAGGCTGGCCTACCCTCCCTTTGTCTCAAGCAAGTGTTTCCAAAGTATGCTAAGCAGTTTAATTATCTGCGACTTGTGGACAGAGTGGCTGCATTGTTCATCCGATTTCTTGGTGTCAAAGGGACAACAAAATTGGGGCCGACGGGTTTCCGGACGTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001389_MULTIEX1-3/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.084
Domain overlap (PFAM):
C1:
PF0313310=TTL=PU(4.7=45.5)
A:
PF0313310=TTL=FE(9.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTTTTGGCAGACGCTTG
R:
TCATATTCCAGTCCACCCGCT
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]