RnoEX0002987 @ rn6
Exon Skipping
Gene
ENSRNOG00000019339 | AABR07051518.1
Description
tubulin tyrosine ligase like11 [Source:NCBI gene;Acc:689746]
Coordinates
chr3:15225636-15239708:-
Coord C1 exon
chr3:15239133-15239708
Coord A exon
chr3:15226686-15226781
Coord C2 exon
chr3:15225636-15225751
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGTTGTCTGTTCTGCCCAGATT
3' ss Score
7.52
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ACGGAATCTACCTCATTAAAGATCCCTGTGACTGCCGCCTGACTGGGACCCTGCATAACAGGCCGGCAGTAGTCCAGGAGTACATCCGCAAGCCTCTCCTTATCGACAAACTCAAGTTCGACATCCGTCTGTATGTCCTGTTGAAGTCCTTGGACCCCTTAGAGATCTATATAGCCAAAGATGGACTCTCTAGGTTTTGTACAGAGCCATATCAAGAACCCAACCCCCAGAACCTGCACCATGTCTTCATGCACTTGACCAACTACTCCCTGAACATCCACAGCGGCAAGTTCGTCCACTCAGACAGCGCCAGCACAGGCAGCAAGAGGACTTTCTCTAGCATTCTCTGTAGACTGTCTTCCAAAGGTGTGGACATCAAGAAGGTCTGGTCTGATATCATCTCCTTAGTTATTAAGACTGTCATCGCCCTGACCCCAGAGCTCAAAGTTTTCTACCAGTCAGACATCCCAACAGGGAGGCCGGGGCCCACCTGCTTCCAG
Seq A exon
ATTCTAGGCTTTGACATTCTTCTGATGAAAAACCTGAAGCCCATGCTACTTGAAGTGAATGCAAACCCCAGCATGAGGATTGAGCATGAGTACGAA
Seq C2 exon
CTTTCTCCAGGAGTGTTTGAAAATATCCCCAGCCTGGTGGACGAAGAAGTGAAGGTGGCCGTGATCAGAGACACGCTGCGCCTCATGGACCCGATGAAGAAGAAAAGGGAGATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019339-'5-8,'5-6,12-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(64.7=100)
A:
PF0313310=TTL=FE(10.5=100)
C2:
PF0313310=TTL=PD(10.0=76.9)
Main Skipping Isoform:
ENSRNOT00000032204fB139
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGACCCCAGAGCTCAAAGT
R:
TCTTCATCGGGTCCATGAGGC
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]