BtaEX6045997 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006716 | PTGS1
Description
Bos taurus prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) (PTGS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105323]
Coordinates
chr11:93219422-93226556:+
Coord C1 exon
chr11:93219422-93219511
Coord A exon
chr11:93225870-93225986
Coord C2 exon
chr11:93226416-93226556
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTTTCTCCCCCACAGTGA
3' ss Score
11.74
5' ss Seq
TCCGTGAGC
5' ss Score
4.32
Exon sequences
Seq C1 exon
GGCAGGGTATCTCGCTCCGATTCCCGCTGCTTCTCCTGCTGCTGTCGCCGTCCCCCGTCTTGCCAGCGGACCCCGGGGCGCCCGCGCCAG
Seq A exon
TGAACCCCTGCTGTTACTATCCATGCCAGCACCAGGGGATCTGTGTTCGCTTCGGCCTTGACCGCTACCAATGTGACTGCACCCGCACGGGCTATTATGGCCCCAACTGCACCATCC
Seq C2 exon
CTGAGATATGGACCTGGCTCCGGACGACTTTGCGGCCCAGCCCGTCTTTCGTCCACTTTCTGCTGACGCATGGGCGCTGGCTGTGGGATTTTGTCAATGCCACCTTCATCCGGGACAAGCTCATGCGTCTGGTACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006716-'1-3,'1-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTATCTCGCTCCGATTCC
R:
GTGAGTACCAGACGCATGAGC
Band lengths:
226-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]