HsaEX6062895 @ hg19
Exon Skipping
Gene
ENSG00000095303 | PTGS1
Description
prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) [Source:HGNC Symbol;Acc:9604]
Coordinates
chr9:125133465-125140852:+
Coord C1 exon
chr9:125133465-125133551
Coord A exon
chr9:125140178-125140294
Coord C2 exon
chr9:125140712-125140852
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTCCATTTCTCACCCACAGTGA
3' ss Score
10.17
5' ss Seq
TCCGTGAGC
5' ss Score
4.32
Exon sequences
Seq C1 exon
GGAGTCTCTTGCTCTGGTTCTTGCTGTTCCTGCTCCTGCTCCCGCCGCTCCCCGTCCTGCTCGCGGACCCAGGGGCGCCCACGCCAG
Seq A exon
TGAATCCCTGTTGTTACTATCCATGCCAGCACCAGGGCATCTGTGTCCGCTTCGGCCTTGACCGCTACCAGTGTGACTGCACCCGCACGGGCTATTCCGGCCCCAACTGCACCATCC
Seq C2 exon
CTGGCCTGTGGACCTGGCTCCGGAATTCACTGCGGCCCAGCCCCTCTTTCACCCACTTCCTGCTCACTCACGGGCGCTGGTTCTGGGAGTTTGTCAATGCCACCTTCATCCGAGAGATGCTCATGCGCCTGGTACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095303-'1-4,'1-3,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=87.5)
C2:
PF0309810=An_peroxidase=PU(33.1=83.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCTTGCTCTGGTTCTTGC
R:
CTGTGAGTACCAGGCGCATG
Band lengths:
226-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)