MmuEX0037715 @ mm10
Exon Skipping
Gene
ENSMUSG00000047250 | Ptgs1
Description
prostaglandin-endoperoxide synthase 1 [Source:MGI Symbol;Acc:MGI:97797]
Coordinates
chr2:36230668-36237791:+
Coord C1 exon
chr2:36230668-36230763
Coord A exon
chr2:36237207-36237323
Coord C2 exon
chr2:36237651-36237791
Length
117 bp
Sequences
Splice sites
3' ss Seq
TACTTGTTTCTCACCCACAGTCA
3' ss Score
8.91
5' ss Seq
TCCGTGAGC
5' ss Score
4.32
Exon sequences
Seq C1 exon
GAAGGAGTCTCTCGCTCTGGTTTCCCCTGCTGCTGCTCCTGCTGCTGCCGCCGACACCCTCGGTCCTGCTCGCAGATCCTGGGGTGCCCTCACCAG
Seq A exon
TCAATCCCTGTTGTTACTATCCGTGCCAGAACCAGGGTGTCTGTGTCCGCTTTGGCCTCGACAACTACCAGTGTGATTGTACTCGCACGGGCTACTCAGGCCCCAACTGTACCATCC
Seq C2 exon
CTGAGATCTGGACCTGGCTTCGGAATTCTCTGCGGCCCAGCCCCTCGTTCACCCATTTCCTGCTGACACATGGATACTGGCTCTGGGAATTTGTGAATGCCACCTTCATCCGAGAAGTACTCATGCGCCTGGTACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047250-'5-6,'5-5,12-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGTCTCTCGCTCTGGT
R:
TGAGTACCAGGCGCATGAGTA
Band lengths:
234-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types