DreEX6046197 @ danRer10
Exon Skipping
Gene
ENSDARG00000010276 | ptgs2b
Description
prostaglandin-endoperoxide synthase 2b [Source:ZFIN;Acc:ZDB-GENE-041014-323]
Coordinates
chr20:34223934-34224536:-
Coord C1 exon
chr20:34224424-34224536
Coord A exon
chr20:34224170-34224286
Coord C2 exon
chr20:34223934-34224077
Length
117 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTTTGTGGTGCAGCGA
3' ss Score
6.94
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ATTCAATACTCTGAACTGGCGAGGTACGACTCGAGACATCAAACACGCCACTGGAATGAAAAGTTCGGTATTATTTATTTTTTTGCTTCTGGGCTTCGTGGTTTGCACAGGAG
Seq A exon
CGAACCCTTGTTGCTCCCATCCCTGTCAGAATCGAGGTGTCTGTACGGAAATGGGCTCCGACGCGTATGAATGTGACTGTACACGGACTGGATATTACGGTCAAAACTGCACAACAC
Seq C2 exon
CCGAGTTTCTCACATGGGTGAAAGTCTCTCTGAAGCCTTCTCCCAACACTGTGCATTACATTCTCACACACTTCAAAAGCTTGTGGAATATTATCAACAACGTGTCGTTTCTGAGAAACGGCATAATGCGATACGTGCTGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010276-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=82.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAACTGGCGAGGTACGA
R:
AGCACGTATCGCATTATGCCG
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]