GgaEX1066102 @ galGal3
Exon Skipping
Gene
ENSGALG00000005069 | PGH2_CHICK
Description
NA
Coordinates
chr8:10059640-10060615:+
Coord C1 exon
chr8:10059640-10059691
Coord A exon
chr8:10060248-10060364
Coord C2 exon
chr8:10060472-10060615
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTGATTTCATTCCAGCCA
3' ss Score
4.61
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ATGCTGCTGCCTTGTGCACTGCTGGCCGCTCTCCTTGCTGCCGGCCACGCAG
Seq A exon
CCAACCCTTGCTGCTCCCTCCCATGTCAGAACAGAGGTGTATGCATGACAACAGGATTTGATCGGTATGAATGTGACTGCACGAGGACGGGCTATTATGGGGAAAACTGTACAACAC
Seq C2 exon
CGGAATTCTTCACGTGGCTGAAACTAATATTGAAACCTACACCAAATACTGTCCACTACATTCTCACCCACTTCAAAGGAGTCTGGAACATCATCAACAACATTTCCTTCTTACGAGATACTATTATGAGATACGTGTTGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005069-'1-1,'1-0,3-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=82.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTGCACTGCTGGCC
R:
ACACGTATCTCATAATAGTATCTCGT
Band lengths:
181-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]