DreEX6026532 @ danRer10
Exon Skipping
Gene
ENSDARG00000004539 | ptgs2a
Description
prostaglandin-endoperoxide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020530-2]
Coordinates
chr2:21265213-21265802:-
Coord C1 exon
chr2:21265674-21265802
Coord A exon
chr2:21265435-21265551
Coord C2 exon
chr2:21265213-21265356
Length
117 bp
Sequences
Splice sites
3' ss Seq
TATGGCTTTTTTATTTGCAGACG
3' ss Score
9.93
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
AATACAACGGGCTCGACCAGAGTAACGCATCTCTGCTTCAACAGCCTCTAGATAATAACACTTCTGGAATGAATAAACTGGTTTGCTTGGTCCTACTTTCAAGCATTTGGATCTTTCCTGGTGAAGGAT
Seq A exon
ACGACCCTTGCTGTGCACAGCCTTGCCAAAACCAGGGCGTGTGTTTATCCAAGGGAGCTGATGCTTATGAATGTGACTGCACCAGGACAGGATATTATGGTGAAAACTGCACTACCC
Seq C2 exon
CTGAGCTTCTCACACGCATCAAATCAGCTCTGAAACCAAGACCAAATGTAGTGCATCATATTTTAACACATTATAAATCAATCTGGGATATCATCAACAGCATCTCTTACCTGAGGGATGGCATAATGCGCTATATCCTGTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004539-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=82.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAGTAACGCATCTCTGC
R:
CGCATTATGCCATCCCTCAGG
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]