BtaEX6070539 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014127 | PGHS-2
Description
Bos taurus prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) (PTGS2), mRNA. [Source:RefSeq mRNA;Acc:NM_174445]
Coordinates
chr16:69269814-69271399:-
Coord C1 exon
chr16:69271238-69271399
Coord A exon
chr16:69270067-69270183
Coord C2 exon
chr16:69269814-69269957
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTACTGTTTTTGTAGCAA
3' ss Score
7.07
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
TGAACGTCAGAGGACGCCCCGGAACTCCGCACCGCGCCTCCTCCGGCCCCGCAGCTCCGATCCGCGCACCTCCACGCCTCCGCCGGCCCCGCGCCCCGCCCGCAGCCGAGATGCTCGCCCGGGCCCTGCTGCTCTGCGCTGCCGTGGCGCTCAGCGGTGCAG
Seq A exon
CAAATCCTTGCTGTTCCCATCCATGCCAGAATCGAGGTGTATGTATGAGTGTAGGATTTGACCAGTATAAATGTGACTGTACCCGAACAGGATTCTACGGTGAAAACTGTACCACAC
Seq C2 exon
CCGAATTTCTGACAAGAATAAAATTACTCCTGAAACCCACTCCCAACACAGTGCACTACATACTTACCCACTTCAAAGGAGTCTGGAACATTGTCAATAAGATCTCCTTCCTGCGAAATATGATTATGAGATATGTGTTGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014127-'0-1,'0-0,5-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=82.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGACGCCCCGGAAC
R:
TCCAGACTCCTTTGAAGTGGGT
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]