RnoEX0071002 @ rn6
Exon Skipping
Gene
ENSRNOG00000002525 | Ptgs2
Description
prostaglandin-endoperoxide synthase 2 [Source:RGD Symbol;Acc:620349]
Coordinates
chr13:67351087-67352398:+
Coord C1 exon
chr13:67351087-67351281
Coord A exon
chr13:67352016-67352132
Coord C2 exon
chr13:67352255-67352398
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTCTTTTTAATATAGCAA
3' ss Score
6.32
5' ss Seq
CGCGTAAGT
5' ss Score
9.93
Exon sequences
Seq C1 exon
GTTGTCAAACTGAGCGGAGAGCTTCAGGAGTACGAAGACCCTGCCTACGAAGGAACTCAGCTCTGTGTCCTGCCAGCTCCCCCGCCAGCTTCACTGCCACCAACGCTGCCACAACTGCTGCCACCACCGCTGCCACCTCTGCGATGCTCTTCCGAGCTGTGCTGCTCTGCGCTGCCCTGGCGCTCAGCCATGCAG
Seq A exon
CAAATCCTTGCTGTTCCAACCCATGTCAAAACCGTGGTGAATGTATGAGCATAGGATTTGACCAATATAAATGTGACTGTACCCGGACTGGATTCTACGGTGAAAACTGTACTACGC
Seq C2 exon
CTGAGTTTCTGACAAGAATCAAATTACTGCTGAAGCCCACCCCAAACACAGTACACTACATCCTGACCCACTTCAAGGGAGTCTGGAACATTGTGAACAACATTCCCTTCCTTCGGAATTCAATCATGAGATACGTGTTGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002525-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=82.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAGTACGAAGACCCTGC
R:
CTCCCTTGAAGTGGGTCAGGA
Band lengths:
253-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]