GgaEX1066102 @ galGal4
Exon Skipping
Gene
ENSGALG00000005069 | heme
Description
Prostaglandin G/H synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:P27607]
Coordinates
chr8:9810426-9811912:+
Coord C1 exon
chr8:9810426-9810988
Coord A exon
chr8:9811545-9811661
Coord C2 exon
chr8:9811769-9811912
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTGATTTCATTCCAGCCA
3' ss Score
4.61
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
CAGTAAAACTGCTGAGATGACCTCATTAAAAGCGAGTGAGCCACGATCCACGCCTGGATCAGCGGGGGGTCAGCAGCGTCCAGCGGGGGGAGCCCGGCGCACACGATCCCGTGGCGGCCCGCTCACAGCGCTGCGCGGTGCTGAGCGCCCCCGCGCCAACCCCACCGCGCCGCACCCGAACCAGACTGAACAGAAAGCAGCGAAGCGCGCCCCGAGCCCGGGGGTGGCCCACAGCAGGTGGGAGCGGGGGCCGGGCCGGGGCGGGGCAAGGCACGCGAAATCCCCCACCCCTTTCGTTAGTTTCCGGCCGGAGGTGGGGGGAGGCGGGTGACTCACGGCGGGATGTATAAATGAGGGTAAGTACCTGGCTGCAGTACGATTTCTGCGATTTCGAGCGCATTTGGAATTTCAGTAGTTGCGAGGAAAGCGTAAAGAAGCCCGCCGGGATATGCTGCTGCCTTGTGCACTGCTGGCCGCTCTCCTTGCTGCCGGCCACGCAG
Seq A exon
CCAACCCTTGCTGCTCCCTCCCATGTCAGAACAGAGGTGTATGCATGACAACAGGATTTGATCGGTATGAATGTGACTGCACGAGGACGGGCTATTATGGGGAAAACTGTACAACAC
Seq C2 exon
CGGAATTCTTCACGTGGCTGAAACTAATATTGAAACCTACACCAAATACTGTCCACTACATTCTCACCCACTTCAAAGGAGTCTGGAACATCATCAACAACATTTCCTTCTTACGAGATACTATTATGAGATACGTGTTGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005069-'0-5,'0-3,2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=82.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCCCCACCCCTTTCGTTA
R:
TCAGCCACGTGAAGAATTCCG
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]