RnoEX0070999 @ rn6
Exon Skipping
Gene
ENSRNOG00000007415 | Ptgs1
Description
prostaglandin-endoperoxide synthase 1 [Source:RGD Symbol;Acc:3439]
Coordinates
chr3:15560887-15570285:+
Coord C1 exon
chr3:15560887-15560982
Coord A exon
chr3:15566784-15566900
Coord C2 exon
chr3:15570104-15570285
Length
117 bp
Sequences
Splice sites
3' ss Seq
TACCTGTTTCTCATCCACAGTCA
3' ss Score
9.57
5' ss Seq
TCCGTGAGC
5' ss Score
4.32
Exon sequences
Seq C1 exon
GAAGGAGTCTCTCGCTCCAGTTTCCCCTGCTGCTGCTCCTGCTGCTGCTCCCACCACCCCCGGTACTGCTCACAGATGCTGGGGTACCCTCACCAG
Seq A exon
TCAATCCCTGTTGTTACTATCCATGCCAGAACCAGGGTGTCTGTGTCCGCTTCGGCCTCGACCACTACCAATGTGACTGTACTCGCACGGGCTACTCGGGCCCCAACTGTACTATCC
Seq C2 exon
GGAAGAAGCAGTTACCAGATATTCATCTTCTGGCCCAACGATTGCTGCTGAGAAGGGAGTTCATTCCCGCCCCGCAGGGGACCAACGTCTTGTTTGCTTTCTTTGCACAACACTTCACCCACCAGTTCTTCAAGACCTCTGGAAAGATGGGTCCTGGCTTTACCAAGGCCTTAGGCCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007415_MULTIEX1-1/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0309810=An_peroxidase=PD(67.5=91.8),PF0309810=An_peroxidase=PU(3.3=19.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGTCTCTCGCTCCAGT
R:
AAGCCAGGACCCATCTTTCCA
Band lengths:
256-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]