DreEX0059247 @ danRer10
Exon Skipping
Gene
ENSDARG00000052148 | ptgs1
Description
prostaglandin-endoperoxide synthase 1 [Source:ZFIN;Acc:ZDB-GENE-020530-1]
Coordinates
chr5:64226423-64239846:+
Coord C1 exon
chr5:64226423-64226512
Coord A exon
chr5:64231586-64231702
Coord C2 exon
chr5:64239706-64239846
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTATGGCTTGTTTTTTCTAGCGA
3' ss Score
7.06
5' ss Seq
TACGTATGT
5' ss Score
5.54
Exon sequences
Seq C1 exon
AGTGTAACTTTTTGCTGAAGTGGACGGTGATTTTGCTGCTGAGTGTGTCCTTTTGTGCTGGTGAAGAAAGCCCGACTTCATCAAACACTG
Seq A exon
CGAATCCTTGTTGCTATTACCCTTGTCAAAACCAAGGGATCTGTGTTCGATATGGCCTGGACAGATATGAATGTGACTGCACCAGAACGGGCTACTATGGAGAAAATTGCACTATAC
Seq C2 exon
CTGAGCTCTGGACGCGGGTCTATCGACTCCTGAAGCCCAGTCCGAATGTTGTCCACTACATCCTCACTCACTTTGACTGGTTATGGGACCTCATCAACAGGTCGTTCCTCAGGGATTGGCTCATGCGGAAAGTGCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052148_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(2.7=3.2)
A:
PF0000822=EGF=PD(94.6=87.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTTTTGCTGAAGTGGACGG
R:
CTGTGAGCACTTTCCGCATGA
Band lengths:
226-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]