BtaEX6046026 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94225795-94233212:+
Coord C1 exon
chr11:94225795-94225908
Coord A exon
chr11:94229634-94229708
Coord C2 exon
chr11:94233087-94233212
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTGTGGTTTTTTCCCCCCAGGCT
3' ss Score
11.15
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GAGTCTCCCCAGGACAGTGCTATCACTCGTGATATTAACCGGACATTCCCAGCCCATGACTACTTTAAGGACACAGGAGGAGATGGACAAGATTCTTTATATAAAATATGCAAG
Seq A exon
GCTTATTCTGTGTATGATGAAGAGATTGGCTATTGCCAAGGCCAGTCATTTCTCGCTGCTGTTCTGCTTCTCCAT
Seq C2 exon
ATGCCTGAGGAACAAGCATTCAGTGTTCTGGTCAAGATCATGTTTGACTATGGTCTCAGGGAACTTTTCAAACAAAACTTTGAAGATTTGCATTGCAAATTTTACCAGTTGGAGCGCCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172-'34-31,'34-30,35-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(18.1=100)
A:
PF0056613=RabGAP-TBC=FE(11.8=100)
C2:
PF0056613=RabGAP-TBC=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACACAGGAGGAGATGGAC
R:
GAGGCGCTCCAACTGGTAAAA
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]