GgaEX0001356 @ galGal3
Exon Skipping
Gene
ENSGALG00000001225 | RABGAP1
Description
NA
Coordinates
chr17:9573727-9577866:+
Coord C1 exon
chr17:9573727-9573840
Coord A exon
chr17:9574744-9574818
Coord C2 exon
chr17:9577723-9577866
Length
75 bp
Sequences
Splice sites
3' ss Seq
AAATTGGATTCCTTTTTTAGGCC
3' ss Score
7.37
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GAGTCTCCACAAGACAGTGCTATCACCCGAGACATCAATCGAACGTTTCCTGCTCATGATTATTTTAAAGATACTGGAGGAGATGGTCAGGACTCCTTGTATAAAATATGCAAG
Seq A exon
GCCTATTCTGTCTATGATGAAGAGATTGGTTACTGTCAAGGCCAATCGTTTCTTGCTGCTGTGCTGCTTCTACAT
Seq C2 exon
GAATACATTCCTGATCTGTATAACCACTTCCTGGACATCAGCCTTGAAGCACACATGTATGCTTCCCAGTGGTTCCTTACATTGTTCACGGCAAAATTCCCTCTCTACATGGTCTTCCATATTATTGACTTACTCTTATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225_MULTIEX2-2/5=1-4
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(18.1=100)
A:
PF0056613=RabGAP-TBC=FE(11.8=100)
C2:
PF0056613=RabGAP-TBC=FE(23.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGCTATCACCCGAGACA
R:
GGAACCACTGGGAAGCATACA
Band lengths:
177-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]