RnoEX0073396 @ rn6
Exon Skipping
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21782079-21789722:+
Coord C1 exon
chr3:21782079-21782192
Coord A exon
chr3:21786511-21786585
Coord C2 exon
chr3:21789597-21789722
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTTCCCTCATGCAGGCA
3' ss Score
11.08
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GAGTCTCCCCAAGACAGTGCTATCACCAGAGATATTAACCGCACATTTCCAGCTCATGACTACTTCAAGGACACAGGAGGAGATGGACAAGATTCCTTATATAAAATATGCAAG
Seq A exon
GCATATTCTGTGTATGATGAAGAGATTGGTTATTGCCAGGGCCAGTCCTTCCTCGCGGCTGTGCTGCTTCTCCAC
Seq C2 exon
ATGCCTGAAGAACAGGCATTCAGTGTTCTGGTCAAGATCATGTTTGACTATGGTCTCAGGGAACTTTTCAAGCAAAATTTTGAAGATCTACATTGCAAGTTCTACCAGCTGGAGCGCCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402-'37-43,'37-41,39-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(18.1=100)
A:
PF0056613=RabGAP-TBC=FE(11.8=100)
C2:
PF0056613=RabGAP-TBC=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAAGGACACAGGAGGAGA
R:
CGCTCCAGCTGGTAGAACTTG
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]