DreEX6087119 @ danRer10
Exon Skipping
Gene
ENSDARG00000098967 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr10:8739165-8744480:-
Coord C1 exon
chr10:8744367-8744480
Coord A exon
chr10:8740315-8740389
Coord C2 exon
chr10:8739165-8739290
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTGTATTTTCTATCCTCCAGGCG
3' ss Score
10.4
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GAATCTCCACAGGACAGTGCCATCACTCGGGACATTAACCGTACGTTTCCTGCACACGACTACTTCAAAGACACAGGGGGTGATGGGCAGGACTCTCTCTATAAGATCTGTAAG
Seq A exon
GCGTATTCTGTTTATGATGAAGAAATCGGTTACTGTCAAGGGCAGTCCTTTCTTGCTGCTGTGCTGCTATTACAC
Seq C2 exon
ATGCCAGAAGAGCAGGCGTTCAGCGTGCTGGTCAAGATCATGTTTGAATACGGTCTCAGGGAGCTCTTTAAGCAGAACTTTGAAGACCTGCACTGCAAGTTCTTCCAGCTGGAGAGACTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098967-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(18.1=100)
A:
PF0056613=RabGAP-TBC=FE(11.8=100)
C2:
PF0056613=RabGAP-TBC=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTTCCTGCACACGACTAC
R:
TGGAAGAACTTGCAGTGCAGG
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]