GgaEX0001356 @ galGal4
Exon Skipping
Gene
ENSGALG00000001225 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr17:8862519-8865936:+
Coord C1 exon
chr17:8862519-8862632
Coord A exon
chr17:8863536-8863610
Coord C2 exon
chr17:8865811-8865936
Length
75 bp
Sequences
Splice sites
3' ss Seq
AAATTGGATTCCTTTTTTAGGCC
3' ss Score
7.37
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GAGTCTCCACAAGACAGTGCTATCACCCGAGACATCAATCGAACGTTTCCTGCTCATGATTATTTTAAAGATACTGGAGGAGATGGTCAGGACTCCTTGTATAAAATATGCAAG
Seq A exon
GCCTATTCTGTCTATGATGAAGAGATTGGTTACTGTCAAGGCCAATCGTTTCTTGCTGCTGTGCTGCTTCTACAT
Seq C2 exon
ATGCCTGAAGAGCAAGCTTTCAGTGTTCTGGTCAAAATCATGTTTGATTATGGACTCAGGGAACTTTTCAAACAAAATTTTGAAGATTTGCACTGCAAGTTCTATCAGCTGGAGCGCCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225-'20-32,'20-29,21-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(18.1=100)
A:
PF0056613=RabGAP-TBC=FE(11.8=100)
C2:
PF0056613=RabGAP-TBC=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGCTATCACCCGAGACA
R:
TGTTTGAAAAGTTCCCTGAGTCCA
Band lengths:
175-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]