BtaEX6046030 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94153055-94154531:+
Coord C1 exon
chr11:94153055-94153121
Coord A exon
chr11:94153738-94153840
Coord C2 exon
chr11:94154362-94154531
Length
103 bp
Sequences
Splice sites
3' ss Seq
GTTGTTATTCTTTTCTTTAGGAA
3' ss Score
9.57
5' ss Seq
AAGGTGGTG
5' ss Score
0.25
Exon sequences
Seq C1 exon
ATGTTTTGGTCTTCTCCTTAGCCCAGGGAAAGATGTACGAAATAGTGACATGCACTTGTTAGATTTG
Seq A exon
GAATCTATGGGCAAAAGTTCAGATGGAAAGTCCTATGTTATTACTGGGAGCTGGAATCCAAAATCCCCACATTTTCAAGTTGTAAATGAAGAAACTCCTAAAG
Seq C2 exon
ATAAAGTGCTGTTTATGACCACAGCTGTTGATTTGGTAATAACAGAAGTACAAGAGCCTGTTCGCTTTCTTCTAGAGACAAAAGTCCGAGTTTGCTCACCTAATGAAAGATTATTCTGGCCCTTCAGCAAACGTAGTACTACTGAAAATTTCTTTTTGAAACTAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172-'19-15,'19-14,20-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(16.5=100)
A:
PF124733=DUF3694=FE(25.6=100)
C2:
PF124733=DUF3694=PD(27.1=63.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTGGTCTTCTCCTTAGCCC
R:
GAAATTTTCAGTAGTACTACGTTTGC
Band lengths:
218-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]