RnoEX0073390 @ rn6
Exon Skipping
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21732762-21736929:+
Coord C1 exon
chr3:21732762-21732828
Coord A exon
chr3:21734884-21734986
Coord C2 exon
chr3:21736760-21736929
Length
103 bp
Sequences
Splice sites
3' ss Seq
GTGTTTACTCTTTCTTTTAGGAG
3' ss Score
10.94
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTGCTTCGGTCTTCTCCTTAGCCCAGGAAAAGATGTCCGAAATAGTGATATGCACTTGTTGGATTTG
Seq A exon
GAGTCTATGGGCAAAAGTTCAGATGGAAAGTCATATGTTATTACTGGAAGCTGGAATCCGAAGTCCCCACATTTTCAAGTTGTGAATGAAGAAACTCCTAAAG
Seq C2 exon
ATAAAGTGCTGTTCATGACAACAGCTGTGGATTTGGTGATAACAGAAGTACAGGAACCTGTTCGATTTCTTCTAGAGACAAAAGTTCGAGTATGCTCACCTAATGAAAGGTTATTCTGGCCCTTCAGCAAACGGAGCACTACTGAGAACTTCTTTCTGAAACTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402-'20-20,'20-19,23-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(16.5=100)
A:
PF124733=DUF3694=FE(25.6=100)
C2:
PF124733=DUF3694=PD(27.1=63.2)
Main Skipping Isoform:
ENSRNOT00000013378fB12025
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCGGTCTTCTCCTTAGCC
R:
CTGCTTCAGTTTCAGAAAGAAGT
Band lengths:
235-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]