MmuEX6100915 @ mm10
Exon Skipping
Gene
ENSMUSG00000035437 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:MGI Symbol;Acc:MGI:2385139]
Coordinates
chr2:37487512-37492079:+
Coord C1 exon
chr2:37487512-37487578
Coord A exon
chr2:37489731-37489833
Coord C2 exon
chr2:37491910-37492079
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTATGTTTACTCTTCCTTAGGAG
3' ss Score
8.62
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
GTGCTTTGGTCTTCTCCTTAGCCCAGGAAAAGATGTCCGAAACAGTGATATGCACTTGCTGGATTTG
Seq A exon
GAGTCTATGGGCAAAAGTTCAGATGGAAAATCATATGTTATTACTGGAAGCTGGAACCCGAAATCCCCACATTTTCAAGTTGTGAATGAAGAAACTCCTAAAG
Seq C2 exon
ATAAAGTGCTGTTCATGACAACAGCTGTGGATTTGGTGATAACTGAAGTACAGGAACCTGTTCGATTTCTTCTAGAGACAAAAGTTCGAGTGTGCTCACCTAATGAAAGGTTATTCTGGCCCTTCAGCAAACGAAGCACTACTGAAAACTTCTTTCTGAAACTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035437_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.100 C2=0.000
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(16.5=100)
A:
PF124733=DUF3694=FE(25.6=100)
C2:
PF124733=DUF3694=PD(27.1=63.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGTCTTCTCCTTAGCCC
R:
CTGCTTCAGTTTCAGAAAGAAGT
Band lengths:
235-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types