GgaEX1047830 @ galGal3
Exon Skipping
Gene
ENSGALG00000001225 | RABGAP1
Description
NA
Coordinates
chr17:9545240-9546399:+
Coord C1 exon
chr17:9545240-9545306
Coord A exon
chr17:9545635-9545737
Coord C2 exon
chr17:9546230-9546399
Length
103 bp
Sequences
Splice sites
3' ss Seq
ATAAGCTTCCTTGTTTCCAGGAG
3' ss Score
7.47
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATGTTTTGGCCTCCTCCTGAGCCGTGGGAAAGATGTTCGGAGTGGTGACATGCACCTTTTAGATTTG
Seq A exon
GAGTCGATGGGTAAAAGTTCTGATGGAAAATCATACGTGATCACTGGTAGCTGGAATCAAAAATCTCCACACTTCCAATTTGTAAATGAAGAAACACCAAAAG
Seq C2 exon
ATAAAGTACTGTTCATGACTACTGCTGTGGATTTGGTGATAACTGAGGTTCAGGAACCTGTTCGATTCATCTTGGAGACTAAAGTGAGAGTTTGTTCACCTAATGAGAGGTTGTTCTGGCCCTTCAGCAAACGTAGCTCCACTGAAAATTTTTTCCTGAAATTAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225-'7-10,'7-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(16.5=100)
A:
PF124733=DUF3694=FE(25.6=100)
C2:
PF124733=DUF3694=PD(27.1=63.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTTTGGCCTCCTCCTGAG
R:
AAATTTTCAGTGGAGCTACGTTTGC
Band lengths:
218-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]