DreEX6087118 @ danRer10
Exon Skipping
Gene
ENSDARG00000098967 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr10:8800447-8805768:-
Coord C1 exon
chr10:8805702-8805768
Coord A exon
chr10:8803476-8803578
Coord C2 exon
chr10:8800447-8800616
Length
103 bp
Sequences
Splice sites
3' ss Seq
TGCCTCCCCCTGTCTGTCAGGAG
3' ss Score
7.43
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTGTTTTGGTCTGCTTTTGAGTCCGGGGAAGAACGTGAAGAACAGTGATATGCACCTGCTCGACCTG
Seq A exon
GAGTCAATGGGCAAAAGCTCTGATGGGAAATCTTACATCATCACAGGGAGCTGGAATCCCAACACTCCTCAGTTTCAAGCTGTGAATGAGGAGACGCCCAAAG
Seq C2 exon
ATAAGTTCATGTACATGACAACGGCGGTTGACTTGGTGATCACTGAGGTCGAGGAGCCTGTGAGGTTCCTGCTAGAGACACGGGTTCGAGTGTGTTCACCCAACGAGAGGCTGTTCTGGCCCTTCAGCAAACGCAGTTACACAGAGACCTTCTATCTCAAACTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098967-'7-7,'7-5,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(16.5=100)
A:
PF124733=DUF3694=FE(25.6=100)
C2:
PF124733=DUF3694=PD(27.1=63.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTGGTCTGCTTTTGAGTCCG
R:
TGTCTGAGTTTGAGATAGAAGGTCT
Band lengths:
234-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]