BtaEX6046031 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94152570-94153840:+
Coord C1 exon
chr11:94152570-94152680
Coord A exon
chr11:94153055-94153121
Coord C2 exon
chr11:94153738-94153840
Length
67 bp
Sequences
Splice sites
3' ss Seq
TATTGGTTCTTTTTTTGCAGATG
3' ss Score
10.23
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
CGCAGTTCCTAAAGATAAAGACAGACAATGCTTTAAACTCCGACAAGGAATTGATAAGAAGATTGTCATCTATGTGCAACAAACAACTAATAAAGAACTTGCCATTGAAAG
Seq A exon
ATGTTTTGGTCTTCTCCTTAGCCCAGGGAAAGATGTACGAAATAGTGACATGCACTTGTTAGATTTG
Seq C2 exon
GAATCTATGGGCAAAAGTTCAGATGGAAAGTCCTATGTTATTACTGGGAGCTGGAATCCAAAATCCCCACATTTTCAAGTTGTAAATGAAGAAACTCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172-'18-14,'18-13,19-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(27.8=100)
A:
PF124733=DUF3694=FE(16.5=100)
C2:
PF124733=DUF3694=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGTTCCTAAAGATAAAGACAGAC
R:
GTGGGGATTTTGGATTCCAGCT
Band lengths:
181-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]