GgaEX0001360 @ galGal4
Exon Skipping
Gene
ENSGALG00000001225 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr17:8833525-8835178:+
Coord C1 exon
chr17:8833525-8833635
Coord A exon
chr17:8834681-8834747
Coord C2 exon
chr17:8835076-8835178
Length
67 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGCCTGACTTTCCAGATG
3' ss Score
10.14
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
TGCAGTTCCCAAAGACAAGGACAGGCAGTGCTTTAAACTCCGCCAAGGAATAGATAAGAAGATAGTGATTTATGTCCAACAGACAACTAATAAGGAGCTTGCTATTGAGAG
Seq A exon
ATGTTTTGGCCTCCTCCTGAGCCGTGGGAAAGATGTTCGGAGTGGTGACATGCACCTTTTAGATTTG
Seq C2 exon
GAGTCGATGGGTAAAAGTTCTGATGGAAAATCATACGTGATCACTGGTAGCTGGAATCAAAAATCTCCACACTTCCAATTTGTAAATGAAGAAACACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(27.8=100)
A:
PF124733=DUF3694=FE(16.5=100)
C2:
PF124733=DUF3694=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTTCCCAAAGACAAGGAC
R:
TTCCAGCTACCAGTGATCACG
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]