DreEX6087117 @ danRer10
Exon Skipping
Gene
ENSDARG00000098967 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr10:8803476-8806207:-
Coord C1 exon
chr10:8806097-8806207
Coord A exon
chr10:8805702-8805768
Coord C2 exon
chr10:8803476-8803578
Length
67 bp
Sequences
Splice sites
3' ss Seq
TGAACATGTTTGTGTTTTAGGTG
3' ss Score
11.78
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
TGCCGTATCAAAAGACAAGGACAGACAGAGCTTCAAACTGCGGGCCGGCATGGACAAAAAAATTGTGATCTACGTCCAGCAAACGTCCAACAAAGAGCTGGCCATCGAGAG
Seq A exon
GTGTTTTGGTCTGCTTTTGAGTCCGGGGAAGAACGTGAAGAACAGTGATATGCACCTGCTCGACCTG
Seq C2 exon
GAGTCAATGGGCAAAAGCTCTGATGGGAAATCTTACATCATCACAGGGAGCTGGAATCCCAACACTCCTCAGTTTCAAGCTGTGAATGAGGAGACGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098967-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(27.8=100)
A:
PF124733=DUF3694=FE(16.5=100)
C2:
PF124733=DUF3694=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGAGCTTCAAACTGCGG
R:
AGCTTGAAACTGAGGAGTGTTGG
Band lengths:
170-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]