RnoEX6016649 @ rn6
Exon Skipping
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21732327-21734986:+
Coord C1 exon
chr3:21732327-21732437
Coord A exon
chr3:21732762-21732828
Coord C2 exon
chr3:21734884-21734986
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCTTTTAAACAGGTG
3' ss Score
12.21
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
TGCTGTTCCCAAAGACAAGGACAGACAGTGCTTTAAACTGCGCCAGGGTATCGATAAGAAGATTGTCATCTGTGTGCAGCAAACAGCTAACAAAGAACTTGCCATTGAAAG
Seq A exon
GTGCTTCGGTCTTCTCCTTAGCCCAGGAAAAGATGTCCGAAATAGTGATATGCACTTGTTGGATTTG
Seq C2 exon
GAGTCTATGGGCAAAAGTTCAGATGGAAAGTCATATGTTATTACTGGAAGCTGGAATCCGAAGTCCCCACATTTTCAAGTTGTGAATGAAGAAACTCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402-'19-19,'19-14,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.114
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(27.8=100)
A:
PF124733=DUF3694=FE(16.5=100)
C2:
PF124733=DUF3694=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTCCCAAAGACAAGGACA
R:
ATGTGGGGACTTCGGATTCCA
Band lengths:
182-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]