MmuEX6100916 @ mm9
Exon Skipping
Gene
ENSMUSG00000035437 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:MGI Symbol;Acc:MGI:2385139]
Coordinates
chr2:37342586-37345353:+
Coord C1 exon
chr2:37342586-37342696
Coord A exon
chr2:37343032-37343098
Coord C2 exon
chr2:37345251-37345353
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTAAACAGGTG
3' ss Score
12.26
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
TGCTGTTCCCAAAGACAAGGACAGGCAATGCTTTAAACTTCGACAAGGAATTGATAAGAAGATTGTTATCTGTGTGCAGCAAACAGCTAACAAAGAACTTGCCATTGAAAG
Seq A exon
GTGCTTTGGTCTTCTCCTTAGCCCAGGAAAAGATGTCCGAAACAGTGATATGCACTTGCTGGATTTG
Seq C2 exon
GAGTCTATGGGCAAAAGTTCAGATGGAAAATCATATGTTATTACTGGAAGCTGGAACCCGAAATCCCCACATTTTCAAGTTGTGAATGAAGAAACTCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035437-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(27.8=100)
A:
PF124733=DUF3694=FE(16.5=100)
C2:
PF124733=DUF3694=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAGACAAGGACAGGCAA
R:
GGATTTCGGGTTCCAGCTTCC
Band lengths:
170-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: