BtaEX6046071 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019470 | NEK6
Description
Bos taurus NIMA (never in mitosis gene a)-related kinase 6 (NEK6), mRNA. [Source:RefSeq mRNA;Acc:NM_001098988]
Coordinates
chr11:95388305-95400813:+
Coord C1 exon
chr11:95388305-95388399
Coord A exon
chr11:95396005-95396118
Coord C2 exon
chr11:95399299-95400813
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTCACCCCTCTCCTTGCAGATG
3' ss Score
13.65
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TGGGGACGCCGTACTACATGTCACCAGAGAGGATCCATGAGAACGGCTATAACTTCAAGTCTGACATCTGGTCTCTGGGCTGTTTGCTGTACGAG
Seq A exon
ATGGCAGCTCTTCAGAGCCCCTTCTATGGAGACAAAATGAATCTCTTCTCCCTCTGCCAGAAGATCGAGCAGTGTGACTACCCGCCTCTCCCCGGGGAACATTACTCTGAGAAG
Seq C2 exon
TTACGAGAACTGGTCAGCATGTGTATCCACCCTGACCCCAACCAGAGACCCGACATCACCTATGTGCACCAGATTGCCAAACAGATGCACGTGTGGACTTCAAGCACCTGAGCGTGGATGCAGCGTGCCTTCTCAGAAGCCACACCTTACCTGCCTTACCTGAGTCTTCTCCAAAGTGGCCACCTGGTAGCTGGGACCAACTAAGACTAGAGGGTTCAGCACGTTCCCCAAAGAGGGGCCCAGGCTTCATAGCAGATGCTGAATACAGGGCTGCTGGGGGGAGGGGCACTGGTCATGTGTTACTGGTGGTCACATTTGAAACTCCTTTCTTTAAACTGTTGTGAACACTCTCAGCTGGGTTGCCAGGGGTGGATGGTTCAGTGAGCCACTGACACACCCCTTATATCTGGACTGTAATGTGAATCTTTCGGATAATTCCTTCAGTGACCTGTCAAGGTTTGTAATAACAGGAGAATACAGGAGACTCTGATTTGTAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019470-'17-14,'17-13,18-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.9=100)
A:
PF0006920=Pkinase=FE(14.2=100)
C2:
PF0006920=Pkinase=PD(10.3=73.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGTACTACATGTCACCAG
R:
GTAAGGCAGGTAAGGTGTGGC
Band lengths:
248-362
Functional annotations
There are 1 annotated functions for this event
PMID: 16476580
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, glutathione s tranferase tag, pull down. ELM ID: ELMI002028; ELM sequence: ALQSPF; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]