GgaEX1039411 @ galGal4
Exon Skipping
Gene
ENSGALG00000001118 | NEK6
Description
serine/threonine-protein kinase Nek6 [Source:RefSeq peptide;Acc:NP_001012549]
Coordinates
chr17:9365449-9374148:+
Coord C1 exon
chr17:9365449-9365543
Coord A exon
chr17:9369444-9369557
Coord C2 exon
chr17:9372141-9374148
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGTGTTTTTCTCCAGATG
3' ss Score
12.78
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TGGGAACTCCATACTATATGTCCCCAGAAAGAATACATGAAAACGGCTATAACTTTAAATCCGATATCTGGTCTTTGGGCTGTTTATTGTATGAA
Seq A exon
ATGGCAGCTCTTCAGAGTCCTTTCTATGGAGATAAAATGAACCTGTTTTCTCTTTGCCAAAAAATAGAGCAATGTGACTACCCGCCTCTTCCAGCTGAACATTATTCGGAGAAG
Seq C2 exon
CTCCGGGAGCTGGTCAGCATGTGCATATATCCCGATCCAGATCAAAGACCTGACATTGGTTACGTGCACCAAATAGCAAAACAAATGCATGTTTGGACCTCCAGCACCTGAACCGTCTGCAGACACTCTCAAAAGCCAGCACAGCTTAGTCTTACTTGAATTTTTTTTCTCAGATGAAACCGACTGGTGCCTGGGCAGCGAGCGAGGGGAGCGCGTAGCAAGGCGCTCCATTATTTCTGCAGGTTATTTGACAAGGACTCTCACAAGGTGGTCATGCTTTAAAGTGAAGATTCTGTGAGGTATTGCAAGTGATTTATTTTTTTTTTTAAGCCAATAAGATGTTACAGGTGTAGATCATTTAAGGGTCTTTTCTTAAACTGTCGTGTGTAATGTAGGATAGACGATATTAACCGGGGTGTCAGCGTTGGGCGCACCTCTTCTATCTTAACTGTAATGTGAAATATTGAAATAATTCCTTCAGTGAAATCACTTTATACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001118-'10-20,'10-16,14-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.8=100)
A:
PF0006920=Pkinase=FE(14.1=100)
C2:
PF0006920=Pkinase=PD(10.7=75.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAACTCCATACTATATGTCCCC
R:
AAGCTGTGCTGGCTTTTGAGA
Band lengths:
242-356
Functional annotations
There are 1 annotated functions for this event
PMID: 16476580
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, glutathione s tranferase tag, pull down. ELM ID: ELMI002028; ELM sequence: ALQSPF; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]