GgaEX0001212 @ galGal4
Exon Skipping
Gene
ENSGALG00000001118 | NEK6
Description
serine/threonine-protein kinase Nek6 [Source:RefSeq peptide;Acc:NP_001012549]
Coordinates
chr17:9356618-9369557:+
Coord C1 exon
chr17:9356618-9356725
Coord A exon
chr17:9365449-9365543
Coord C2 exon
chr17:9369444-9369557
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCATTTTCTTTGCAGTGG
3' ss Score
9.4
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ACATAAAACCAGCCAATGTGTTTATAACAGCCACAGGGGTGGTGAAGCTGGGAGATCTTGGATTAGGCCGGTTTTTTAGTTCTAAAACCACTGCAGCACATTCCTTAG
Seq A exon
TGGGAACTCCATACTATATGTCCCCAGAAAGAATACATGAAAACGGCTATAACTTTAAATCCGATATCTGGTCTTTGGGCTGTTTATTGTATGAA
Seq C2 exon
ATGGCAGCTCTTCAGAGTCCTTTCTATGGAGATAAAATGAACCTGTTTTCTCTTTGCCAAAAAATAGAGCAATGTGACTACCCGCCTCTTCCAGCTGAACATTATTCGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001118_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.7=100)
A:
PF0006920=Pkinase=FE(11.8=100)
C2:
PF0006920=Pkinase=FE(14.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTGAAGCTGGGAGATCT
R:
AATGTTCAGCTGGAAGAGGCG
Band lengths:
174-269
Functional annotations
There are 1 annotated functions for this event
PMID: 16476580
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, glutathione s tranferase tag, pull down. ELM ID: ELMI002027; ELM sequence: YYMSPE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]