BtaEX6046098 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009017 | NR5A1
Description
Bos taurus nuclear receptor subfamily 5, group A, member 1 (NR5A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174403]
Coordinates
chr11:95531614-95534805:-
Coord C1 exon
chr11:95534689-95534805
Coord A exon
chr11:95534397-95534538
Coord C2 exon
chr11:95531614-95532239
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTGACTCCCCTCTCTCCCAGGGC
3' ss Score
10.7
5' ss Seq
AAGGTGCGA
5' ss Score
7.16
Exon sequences
Seq C1 exon
GCGGACGCCGTGGGCATGGACTATTCGTACGACGAGGACCTGGACGAGCTGTGCCCCGTGTGTGGGGACAAGGTGTCCGGCTACCACTACGGGCTGCTCACATGCGAGAGCTGCAAG
Seq A exon
GGCTTCTTCAAGCGCACGGTGCAGAACAACAAGCACTACACGTGCACCGAGAGCCAGAGCTGCAAGATCGACAAGACTCAGCGCAAGCGCTGTCCCTTCTGCCGCTTCCAGAAGTGCCTGACGGTGGGGATGCGCCTGGAAG
Seq C2 exon
CTGTGCGCGCTGACCGCATGCGAGGCGGCCGGAACAAGTTTGGGCCCATGTACAAGCGGGACCGGGCCCTGAAGCAGCAGAAGAAGGCACAGATTCGAGCCAATGGCTTCAAGCTGGAGACAGGCCCCCCAGTGGGGGTGCCCCCGCCGCCCCCTCCCCCACCGGACTACATGCTGCCCCATGGCCTGCATGCATCTGAGCCCAAGGGCCTGGCCTCAGGTCCACCAGCTGGGCCACTGGGCGACTTTGGGGCCCCAGCGTTGCCTATGGCTGTGCCCAGCGCCCACGGGCCACTGGCTGGCTACCTCTACCCTGCCTTCCCTGGCCGCGCCATCAAGTCTGAGTACCCAGAGCCCTATGCCAGCCCCCCACAGCCCGGGCCACCCTACGGCTACCCAGAGCCCTTCTCGGGGGGGCCTGGTGTGCCCGAGCTTATCCTCCAGCTGCTGCAGCTGGAGCCAGATGAGGACCAAGTGCGGGCACGCATCGTGGGCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009017-'6-3,'6-1,9-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.526
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(32.9=67.6),PF038549=zf-P11=PU(15.4=23.5)
A:
PF0010513=zf-C4=PD(64.3=93.8),PF038549=zf-P11=PD(80.8=87.5)
C2:
PF0010425=Hormone_recep=PU(19.0=18.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGTGTCCGGCTACCACTA
R:
CTTGGGCTCAGATGCATGCAG
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]