RnoEX0060879 @ rn6
Exon Skipping
Gene
ENSRNOG00000012682 | Nr5a1
Description
nuclear receptor subfamily 5, group A, member 1 [Source:RGD Symbol;Acc:68350]
Coordinates
chr3:23013937-23016787:-
Coord C1 exon
chr3:23016671-23016787
Coord A exon
chr3:23016425-23016566
Coord C2 exon
chr3:23013937-23014565
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATTCCCTTCCTCTGGAGCAGGGC
3' ss Score
5.97
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
GCGGACGCCGCGGGCATGGACTATTCGTACGACGAGGACCTGGACGAGCTGTGTCCAGTGTGTGGTGACAAGGTGTCGGGCTACCACTACGGGCTGCTCACGTGCGAGAGCTGCAAG
Seq A exon
GGCTTCTTCAAGCGCACAGTCCAGAACAACAAGCATTACACGTGCACCGAGAGTCAGAGCTGCAAAATCGACAAGACGCAGCGTAAGCGCTGTCCCTTCTGCCGCTTCCAGAAGTGCCTGACGGTGGGCATGCGCCTGGAAG
Seq C2 exon
CTGTGCGTGCTGATCGAATGCGGGGCGGCCGGAACAAGTTTGGGCCCATGTACAAGAGAGACCGGGCCTTGAAGCAGCAGAAGAAAGCACAGATTCGGGCCAATGGCTTCAAACTGGAGACCGGACCACCGATGGGGGTTCCCCCGCCACCCCCTCCCCCACCGGACTACATGTTACCCCCTAGCCTGCATGCACCGGAGCCCAAGGCCCTGGTCTCTGGCCCACCCAGTGGGCCGCTGGGTGACTTTGGAGCCCCATCTCTGCCCATGGCCGTGCCTGGTCCCCACGGGCCTCTGGCTGGCTACCTCTATCCTGCCTTCTCTAACCGCACCATCAAGTCTGAGTATCCAGAGCCCTACGCCAGCCCCCCTCAACAGCCAGGGCCACCCTACAGCTATCCGGAGCCCTTCTCAGGAGGGCCCAATGTACCAGAGCTCATATTGCAGCTGCTGCAACTAGAGCCAGAGGAGGACCAGGTGCGTGCTCGCATCGTGGGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012682_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.538
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(32.9=67.6)
A:
PF0010513=zf-C4=PD(64.3=93.8)
C2:
PF0010425=Hormone_recep=PU(19.8=19.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTGTGGTGACAAGGTGT
R:
ATGCAGGCTAGGGGGTAACAT
Band lengths:
253-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]