GgaEX1040304 @ galGal3
Exon Skipping
Gene
ENSGALG00000001080 | NR5A1
Description
NA
Coordinates
chr17:10159187-10162625:-
Coord C1 exon
chr17:10162510-10162625
Coord A exon
chr17:10162103-10162244
Coord C2 exon
chr17:10159187-10159827
Length
142 bp
Sequences
Splice sites
3' ss Seq
GTCGCCTTTGGCCGCCGTAGGGC
3' ss Score
5.71
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
GGCCGCCGGCGGGGATGGACTATTCGTATGATGAGGATCTGGACGAGCTGTGTCCGGTCTGCGGGGACAAGGTCTCCGGGTACCACTACGGGCTGCTCACCTGCGAGAGCTGCAAG
Seq A exon
GGCTTCTTCAAGAGGACCGTGCAGAACAACAAGCACTACACCTGCACCGAGAGCCAGAACTGCAAGATCGACAAGACCCAGAGGAAGCGCTGCCCCTACTGCCGCTTCCAGAAGTGCCTGACCGTGGGGATGCGCCTGGAAG
Seq C2 exon
CCGTGCGCGCGGATCGGATGCGCGGCGGGAGGAATAAGTTTGGGCCCATGTACAAACGGGACCGTGCCTTAAAGCAGCAGAAGAAAGCGCTGATCCGCGCCAACGGCTTCAAGCTGGAGACGGTGCCACAGATCGTGTCACCTGTGCAGAATGACTACGGGCTGTCCTCCACCATCCACAGCATCCACGCCATGGCCAAGACGCTGCCGCCCAACCCCGCCGCCCTGACGCCTGCTGACTATGAACGCGGCCCCTACGGGACCCCCTCCCTGGCCATGACTGTGCCCGGCCACACGCCGCTCGCCGGCTACCACTACCCCTCCTTCCCCAACCGCGCCATCAAGTCTGAGTACCCCGACCACTACAGTGCTGCACATGAGGCCGTGCCCACCTATGCATACCCAGAGACCTACCCCAGCAGTTCCCCACCCGACATCCCCGAGGTCATCCTGAAGCTGCTGCAGCTGGAGCCTGACGAGGCGCAGGTGAAGGCTCGCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001080-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGATCTGGACGAGCTGT
R:
GACAGCCCGTAGTCATTCTGC
Band lengths:
252-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]