DreEX6052108 @ danRer10
Exon Skipping
Gene
ENSDARG00000103176 | nr5a1a
Description
nuclear receptor subfamily 5, group A, member 1a [Source:ZFIN;Acc:ZDB-GENE-010504-1]
Coordinates
chr8:52864477-52872741:-
Coord C1 exon
chr8:52872634-52872741
Coord A exon
chr8:52870477-52870618
Coord C2 exon
chr8:52864477-52864916
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACTGTGCTTTACCATGTCAGGGT
3' ss Score
7.12
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
ACGGTGATGGACTTCAGAGCAGATGAGGATTTGGAGGAGCTTTGCCCGGTGTGCGGAGATAAAGTGTCCGGTTATCATTACGGCCTTCTGACCTGCGAAAGTTGTAAG
Seq A exon
GGTTTTTTCAAGAGGACAGTTCAGAATAACAAGAGATACACGTGCACACAGAACCAGGACTGCGGCATCGACAAAACTCAGAGGAAAAGATGTCCGTTCTGCCGCTTCCAGAAGTGTCTGAGTGTCGGCATGAGACTTGAGG
Seq C2 exon
CTGTGCGTGCAGACCGGATGAGAGGTGGAAGAAATAAGTTTGGCCCAATGTACAAGCGAGACCGAGCCTTAAAGCAGCAGAAGCGAGCTTTAATCCGAGCTAGCGGCTTCAAACTGGAGGCTAACGGGACGCTGCTGTCGGGACAGACAGAGTTCAGTTCTGTAGGTCTGCAGTCTCCCTATGACTGTCCTCCGCCTGCTCTCGGAGTCGCTCTGCAGAATTACGGCTCATTCCCAGCACAGTATCAGTACACGGCTCCGTCTCTACCCAAATCCATCAAAGCCGAGTATCCGGACGCGTACTCCAGCTCTCCGGACTCCACGCTGGGTTACTCATACGCTGATGGATGCCTGAGCGCTTCACCACACAGTGTCCCCATAAACCCTGCGCTGCCGCCGCTGGTGCTGGAGCTGCAGAGCTGCGACCCAGATGAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103176-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(32.9=67.6)
A:
PF0010513=zf-C4=PD(64.3=93.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTGACCTGCGAAAGTT
R:
TGAGCCGTAATTCTGCAGAGC
Band lengths:
256-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]