GgaEX1040304 @ galGal4
Exon Skipping
Gene
ENSGALG00000001080 | NR5A1
Description
steroidogenic factor 1 [Source:RefSeq peptide;Acc:NP_990408]
Coordinates
chr17:9439266-9444852:-
Coord C1 exon
chr17:9444734-9444852
Coord A exon
chr17:9442182-9442323
Coord C2 exon
chr17:9439266-9439906
Length
142 bp
Sequences
Splice sites
3' ss Seq
GTCGCCTTTGGCCGCCGTAGGGC
3' ss Score
5.71
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGGCAGCGCTGCCCGGCACTCACGGAGTCTCCTCGAGCTGGAGCTGCTCACCATCGACGCAGAAGAAGCTCTCCTGTGACCTCGGCCCCGTGCACAGCACAGCGCTGAGCCGCATCGAG
Seq A exon
GGCTTCTTCAAGAGGACCGTGCAGAACAACAAGCACTACACCTGCACCGAGAGCCAGAACTGCAAGATCGACAAGACCCAGAGGAAGCGCTGCCCCTACTGCCGCTTCCAGAAGTGCCTGACCGTGGGGATGCGCCTGGAAG
Seq C2 exon
CCGTGCGCGCGGATCGGATGCGCGGCGGGAGGAATAAGTTTGGGCCCATGTACAAACGGGACCGTGCCTTAAAGCAGCAGAAGAAAGCGCTGATCCGCGCCAACGGCTTCAAGCTGGAGACGGTGCCACAGATCGTGTCACCTGTGCAGAATGACTACGGGCTGTCCTCCACCATCCACAGCATCCACGCCATGGCCAAGACGCTGCCGCCCAACCCCGCCGCCCTGACGCCTGCTGACTATGAACGCGGCCCCTACGGGACCCCCTCCCTGGCCATGACTGTGCCCGGCCACACGCCGCTCGCCGGCTACCACTACCCCTCCTTCCCCAACCGCGCCATCAAGTCTGAGTACCCCGACCACTACAGTGCTGCACATGAGGCCGTGCCCACCTATGCATACCCAGAGACCTACCCCAGCAGTTCCCCACCCGACATCCCCGAGGTCATCCTGAAGCTGCTGCAGCTGGAGCCTGACGAGGCGCAGGTGAAGGCTCGCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001080_MULTIEX1-2/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.140
Domain overlap (PFAM):
C1:
NA
A:
PF0010513=zf-C4=PD(64.3=93.8)
C2:
PF0010425=Hormone_recep=PU(20.6=20.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCACGGAGTCTCCTCGAG
R:
CATTCTGCACAGGTGACACGA
Band lengths:
256-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]