DreEX0051464 @ danRer10
Exon Skipping
Gene
ENSDARG00000023362 | nr5a1b
Description
nuclear receptor subfamily 5, group A, member 1b [Source:ZFIN;Acc:ZDB-GENE-040702-6]
Coordinates
chr21:8185135-8191624:+
Coord C1 exon
chr21:8185135-8185253
Coord A exon
chr21:8185770-8185911
Coord C2 exon
chr21:8190882-8191624
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTTAATTCCGTATTTAAAGGGT
3' ss Score
5.45
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCGCTCGGCGGGGCGGGATGGACTACAGTTATGATGCGGACCTGGAAGAGATGTGTCCGGTGTGCGGGGATAAAGTTTCTGGCTATCATTATGGTTTATTAACCTGCGAAAGCTGCAAG
Seq A exon
GGTTTCTTTAAAAGGACCGTACAGAATAACAAACGGTACACATGTGCAGAGAGTCAGGACTGTAAGATTGATAAAACCCAGAGGAAACGGTGTCCTTTCTGCCGCTTCCAGAAATGTCTCAACGTCGGGATGCGACTGGAAG
Seq C2 exon
CTGTCCGTGCGGATAGGATGCGAGGAGGCCGCAACAAATTCGGCCCCATGTATAAGCGAGACCGGGCGTTAAAGCAGCAGAAGAAAGCTCTCATCCGGGCCAGTGGCTTAAAGATGGAAGCCACACCCCCTTTGCTGACGTCACCACAACCTGACTACACCTTCAGCACAGCTTTGTCTGTGCCAGCTCCGAAAAACACCCATCCGAACATCGTCACCTCTGTGGCACCCACCGATTACGAACGCAGCCTCTACGCATCCAGCTCCCTGAGTTTATCCGTCCCCATCCCGGCCCACACTCCTCTCCCAGCACAATACCCCTATCCAAATCTGCCCAGCCGTGCCATAAAGTCTGAGTATCCTGACCACTACACAAGCTCAGAGCATTACACCAGTGCCAGCTCCCCAGAGTCAGTGCCAGGCTACACGTATATCGAGCAAACACGGGTGTCCAGCAGCCCGCAGGTGGTGGCACCGGGTTTAACAGTGCCGCCTTTGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023362_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.351
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(32.9=67.6)
A:
PF0010513=zf-C4=PD(64.3=93.8)
C2:
PF0010425=Hormone_recep=PU(22.6=19.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCGGACCTGGAAGAGAT
R:
GTCAGGTTGTGGTGACGTCAG
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]