BtaEX6046130 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95875010-95875915:-
Coord C1 exon
chr11:95875813-95875915
Coord A exon
chr11:95875554-95875708
Coord C2 exon
chr11:95875010-95875156
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTGTGCCTGGCCTAGGTC
3' ss Score
7.96
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GCCGCTGACCTGACAGCCATGATGGGCGAGAAGGAGCAGAGTCTGCAGGAGAAAATGGAAGTGATTCTCCAGAAAGAGCAGGAGATTCTCCAGCTGAAGAAAG
Seq A exon
GTCACGACTCTGCGCTGCTGCAGACACGCCAGCTGCAGAGCGAGCTGGAGGCCCTGCAGGGCCTGAGGGCCGAGGAGGCCACGGCCACGCGGGAGGACCTGCTGAGGCTGACGGGCCAGGAGCGGCCCCTGGTGCTGTCAGCCAGCAAGCCCCAT
Seq C2 exon
GTGACCTCGAGGGCCAGGCAAGACCCCGAGTACCAGCTTCCAGCTGTGGAGGGAATACCAAACGGAGAGATGGGGGCAGCCACGGATCTGGGGCAGCTACAGAAGGAAAAACAGGACTTGGAGCAGCAACTTCTAGAGAAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286-'24-26,'24-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=0.558 C2=0.959
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=FE(20.7=100)
A:
PF045827=Reo_sigmaC=PD(18.3=57.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCTGACAGCCATGATGG
R:
TTTTTCTCTAGAAGTTGCTGCTCCA
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]