RnoEX0039157 @ rn6
Exon Skipping
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23315951-23316711:-
Coord C1 exon
chr3:23316609-23316711
Coord A exon
chr3:23316377-23316510
Coord C2 exon
chr3:23315951-23316094
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTATACTCCCACCACCCTAGGTC
3' ss Score
7.68
5' ss Seq
CTAGTGAGC
5' ss Score
3.75
Exon sequences
Seq C1 exon
GCCACTGAGCTGACAGCCATCATAGAAGAGAAAAATCAGAGCCTATGTGAAAAGGATGAGGCACTTCTCCAGAAGGAGGAGGAACTTCAACAGCTGGAAAAAG
Seq A exon
GTCACAACTCTGCCCTGCTGCAGATGCACCAACTGCAGAGAGAACTAGAGACCTTGAAGACTTTCAGAGCCCAGGAGGCAATGCCAGCCACAACAGGAGAGGACTGCCTGCCACTGCAGGGCCAGGAGCCACTA
Seq C2 exon
GTCATCTCAAAAGCCATGCAGAATTGTGAGTATGAGCTTCCAGCTGCAGAAGGAACTCCAAATGGTGAGGTTGGAGCCATGGATCTAAAGCAGCTACAGAAAGAAAAACAGGACTTAGAACAGCAACTTACAGAGAAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493-'23-27,'23-26,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=0.800 C2=0.771
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGAGCTGACAGCCATCAT
R:
ATTTTTCTCTGTAAGTTGCTGTTCT
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]