GgaEX6015628 @ galGal4
Exon Skipping
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9573183-9574946:+
Coord C1 exon
chr17:9573183-9573285
Coord A exon
chr17:9574162-9574319
Coord C2 exon
chr17:9574788-9574946
Length
158 bp
Sequences
Splice sites
3' ss Seq
GCAAGTTTCTTCATCCTCAGATC
3' ss Score
6.38
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTTTCGCATCTGGCTTCCTTAATAAAGGACAAAGACCGGCTTATTGATGAAAAATCTGGTATGCTTCTAAAACAGAAGGAAGAACTAAACCAACTCAGGCAAG
Seq A exon
ATCATGAAGCTGCATTGCTGCAAATGCACCAGTTACGATCTGACATAGAGGCAAGTAATAGCCAAGCAGTGGAGAAAGAAGAAACAGCAAGGAAGGAAATAGAAGAATTGAAGCTGCAGATACAGGAGTTCCTATTGGCCAGAGAACATGAGAAAAAT
Seq C2 exon
GTTTCAGAACTAGAAGAATCAGCAAGAGGCTTGAATGAGCACTTACATCTTCCAGAAAATTGTGCGACAGAACAGAATGGAGAGGTAACAGCTACAGATGTCATTCAACTTCAGAAGGATAACAGAGAGCTGGAACAGCAAATTGTTGAGAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025-'25-34,'25-33,26-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=0.566 C2=0.557
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCGCATCTGGCTTCCTTA
R:
TCTCAACAATTTGCTGTTCCAG
Band lengths:
254-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]