HsaEX0027940 @ hg38
Exon Skipping
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr9:124888253-124889536:-
Coord C1 exon
chr9:124889434-124889536
Coord A exon
chr9:124889143-124889303
Coord C2 exon
chr9:124888253-124888396
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCCTCCCCGACCTAGGTC
3' ss Score
10.49
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
GCAGCTAACCTGACAGCCATAATAGACGAGAAGGAACAGAATCTGCGGGAAAAAACCGAAGTGCTTCTCCAGAAAGAGCAGGAGATTCTCCAGCTGGAGCGAG
Seq A exon
GTCACAACTCTGCCCTGCTGCAGATACACCAGCTGCAGGCCGAGCTGGAGGCCCTGAGGACCCTCAAGGCGGAGGAGGCTGCAGTGGTCGCGGAGCAGGAGGACCTGCTGAGGCTGCGGGGCCCATTGCAGGCCGAAGCACTCTCAGTCAATGAGTCGCAC
Seq C2 exon
GTGACCTCGAGGGCCATGCAGGACCCTGTGTTCCAGCTTCCAACTGCAGGAAGAACACCAAATGGTGAGGTTGGGGCCATGGATCTCACACAGCTACAGAAGGAGAAACAGGACTTGGAGCAGCAACTTCTGGAGAAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935-'49-49,'49-47,52-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.130 C2=0.849
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTAACCTGACAGCCATA
R:
TTTTCTCCAGAAGTTGCTGCTCC
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development