MmuEX0021405 @ mm9
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:38878221-38878995:-
Coord C1 exon
chr2:38878893-38878995
Coord A exon
chr2:38878660-38878793
Coord C2 exon
chr2:38878221-38878364
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTATACTCCCACTGCCCTAGGTC
3' ss Score
7.6
5' ss Seq
CTTGTGAGA
5' ss Score
1.96
Exon sequences
Seq C1 exon
GCCACTGAGTTGACAGCCATCATAGAAGAGAAAAATCAGAGCCTGTGTGAAAAGGATGAGGCACTTCTCCAGAAGGAGCAGGAACTTCGACAGCTGGAAAAAG
Seq A exon
GTCACAGTTCTGCCCTGCTGCAGATGCACAAACTGCAGAGGGAACTAGAGGCCTTGAAGACTTGCAAGGCTCAGGAGGCAATGCCAGCCACAACAGGAGAGGACTGCCTGCCACTGCAGGGCCAGGAGCCACTT
Seq C2 exon
GTCATTTCAAAAGCCATGCAGAATTCTGAGTATGAGCTTCCAGCTGCAGAAGGAACTCCAAACGGTGAGGTTGGAGCCAGTGATCTAAAGCAGCTACAGAAAGAAAAGCAGGACTTAGAACAGCAACTTATCGAGAAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-'20-22,'20-21,21-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.800 C2=0.812
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTGAGTTGACAGCCATC
R:
TTTTTCTCGATAAGTTGCTGTTCT
Band lengths:
243-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: